miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|195208135|gb|FG471121.1|FG471121 TTTTTTTTTTTACAAATCCAAACAAGGCCTTGTTATATTAAGATGTCATGTGAAACTGAAACAAAAACAAAAAAGTGGTC
AGGACTCAGGAGGGTCTCATAGAAAAGTGGAATCCATTTTGTTGTAGCCAATTTTGGGGTGCTGTGGTTATGATCTTCTG
CTGTGGGAATCCTGATGATGCTGCAGCACTTGCAAACACTTGGCCGGGAGGAGGATTAACGATATTGAGTTGCCAATTTT
GATGCTCACTTGTAGAGAGTGACAGCTTTCCCCCATTAACATTAGTACTGCTGCTTGGACACTGAACCTTGGGCTGAAAT
TCGCGGTTACGCCAATCAGTTACTTCAATAGGCATAGAAGTATGGCGCTGATCATCTGCAATGTCGTGGCTCTTCTGTTT
CGAGGCTGAGCTGCCCAAGCTCAAATCCAAATTATGGTCTGATGGCTTGCCTGAACATTCAGTGGAATTGAGTTCATCTT
CATAGATGCTGGGATCAAAGTTGGTCACAGCTTCCTTGCCATTACACTTGATTGCAGCTTTATCATAAGCCCCTGGCAGC
TTCAAT




Most similar to sp|P47927|AP2_ARATH

>>sp|Q9FY14|TIP1_MEDTR Probable aquaporin TIP-type OS=Medicago
           truncatula GN=AQP1 PE=1 SV=1
          Length = 250

 Score = 81.3 bits (199), Expect(2) = 9e-22
 Identities = 43/82 (52%), Positives = 49/82 (59%)
 Frame = +3

Query: 99  MPINRIALGSHQEVYHPGALKAAFAEFISTLIFVFAGQGSGMAFSKXXXXXXXXXXXXXX 278
           MPI  IA+G+ QE  HP  LKA  AEFIST IFVFAG GSG+A++K              
Sbjct: 1   MPIRNIAVGTPQEATHPDTLKAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATPAGLIS 60

Query: 279 XXVAHAFPLFVAVSVGPTSPAG 344
             +AHAF LFVAVSVG     G
Sbjct: 61  ASIAHAFALFVAVSVGANISGG 82



 Score = 43.1 bits (100), Expect(2) = 9e-22
 Identities = 19/21 (90%), Positives = 20/21 (95%)
 Frame = +2

Query: 323 GPNISGGNVNPAVTFGAFVGG 385
           G NISGG+VNPAVTFGAFVGG
Sbjct: 76  GANISGGHVNPAVTFGAFVGG 96


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P47927|AP2_ARATH Floral homeotic protein APETALA 2
           OS=Arabidopsis thaliana GN=AP2 PE=1 SV=1
          Length = 432

 Score =  106 bits (265), Expect = 8e-23
 Identities = 80/175 (45%), Positives = 97/175 (55%), Gaps = 21/175 (12%)
 Frame = -2

Query: 550 AYDKAAIKCNGKEAVTNFDPSIYEDELNSTECSGKPS---DHNLDLSLGSSA-SKQKSHD 383
           AYDKAAIKCNGK+AVTNFDPSIY++ELN+ E SG P+   DHNLDLSLG+SA SK KS D
Sbjct: 262 AYDKAAIKCNGKDAVTNFDPSIYDEELNA-ESSGNPTTPQDHNLDLSLGNSANSKHKSQD 320

Query: 382 I-------ADDQRHTS--MPIEVTDWRNREFQPKVQCPSSSTNVNGGKLSL-STSEHQNW 233
           +         D  H++  + +  T   N       Q P SS   +GG  SL   +E+  +
Sbjct: 321 MRLRMNQQQQDSLHSNEVLGLGQTGMLNHTPNSNHQFPGSSNIGSGGGFSLFPAAENHRF 380

Query: 232 QLNIVNPPPGQVFASAAASSGFPQQ------KIITTAPQNWLQQNGFHFS-MRPS 89
                     QV  +AAASSGF            +T  QNWLQ NGF    MRPS
Sbjct: 381 D---GRASTNQVLTNAAASSGFSPHHHNQIFNSTSTPHQNWLQTNGFQPPLMRPS 432